Posts
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Bioinformatician without Borders
Mar 1, 2023
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GTDB and MinHash - a little revolution
Dec 14, 2019 - Dec 17, 2019
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Introducing kcst
Oct 11, 2018
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Evidence-based daughter
Dec 30, 2016
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Architectural Decision Making
Oct 28, 2016
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OpenCL on a dual graphics Dell M4800
Aug 18, 2016 - Mar 1, 2017
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Total Perspective Vortex
Jul 11, 2016
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The Automator
Feb 3, 2016 - Dec 29, 2016
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Introducing Unfasta
Jan 22, 2016 - Apr 6, 2018
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Static sites the next big thing
Jan 6, 2016
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Farewell Dr Dobb's
Dec 16, 2015
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Blessed Redshift
Nov 30, 2015
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Introducing ... io.zwets.it
Oct 23, 2015
Notes
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BLAST Command-line Reference
Command-line reference for the NCBI BLAST suite, reorganised because the tools lack individual man pages and information is spread all over.
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blast-galley
Blast-galley is a personal collection of scripts for doing things with BLAST.
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Jekyll Notes
Scratch page with Jekyll and (GitHub flavoured) Markdown samples and links.
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kcst - K-mer counting sequence typer
Sub-second species prediction and MLST typing for bacterial genome assemblies
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Nano Cookbook - course materials
Notebook with instructions for May 2023 workshop 'Strengthening Microbial Risk Assessment for Food Safety and Antimicrobial Resistance Using Portable DNA Sequencing Technology
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NCBI Notes
Miscellaneous links and notes kept on the NCBI databases and tools.
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unfasta - FASTA without the pesky line breaks
Unfasta is a suite of command-line utilities for working with FASTA files in the common pipes and filters style of Unix and GNU.