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BLAST Command-line Reference
Command-line reference for the NCBI BLAST suite, reorganised because the tools lack individual man pages and information is spread all over.
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blast-galley
Blast-galley is a personal collection of scripts for doing things with BLAST.
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Jekyll Notes
Scratch page with Jekyll and (GitHub flavoured) Markdown samples and links.
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kcst - K-mer counting sequence typer
Sub-second species prediction and MLST typing for bacterial genome assemblies
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Nano Cookbook - course materials
Notebook with instructions for May 2023 workshop 'Strengthening Microbial Risk Assessment for Food Safety and Antimicrobial Resistance Using Portable DNA Sequencing Technology
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NCBI Notes
Miscellaneous links and notes kept on the NCBI databases and tools.
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unfasta - FASTA without the pesky line breaks
Unfasta is a suite of command-line utilities for working with FASTA files in the common pipes and filters style of Unix and GNU.