Finally got around to getting kcst in publishable shape.
kcst predicts species and MLST for bacterial genome assemblies, and does it fast: it
takes less than a second for the average assembly.
kcst comes with
khc (k-mer hit counter), a fast and accurate tool to compute
sequence similarity between a query sequence and a set of subject sequences.
Homepage is here: https://io.zwets.it/kcst, and here is the code.